Macroecological laws in experimental microbial systems
Shoemaker, W.R.,, A. Sanchez, and J. Grilli. Macroecological laws in experimental microbial systems. bioRxiv (2023).
Publications and preprints
A macroecological perspective on genetic diversity in the human gut microbiome
Shoemaker, W.R. A macroecological perspective on genetic diversity in the human gut microbiome. Plos One 18, 7 (2023).
Macroecological patterns in coarse-grained microbial communities
Shoemaker, W.R., and J. Grilli. Macroecological patterns in coarse-grained microbial communities. bioRxiv (2023).
Bacteria-phage coevolution with a seed bank
Schwartz, D.A., W.R. Shoemaker, Magalie, A., Weitz, J., and J.T. Lennon. Bacteria-phage coevolution with a seed bank. ISME J. 17, 1315–25 (2023).
Ecological Stability Emerges at the Level of Strains in the Human Gut Microbiome
Wolff, R., W.R. Shoemaker, and N.R. Garud. Ecological Stability Emerges at the Level of Strains in the Human Gut Microbiome. mBio e02502-22 (2023).
Seed Banks Alter the Rate and Direction of Molecular Evolution in Bacillus subtilis
Shoemaker, W.R., E. Polezhaeva, K.B. Givens, and J.T. Lennon. Seed Banks Alter the Rate and Direction of Molecular Evolution in Bacillus subtilis. Genetics iyac071 (2022).
Predicting Parallelism and Quantifying Divergence in Microbial Evolution Experiments
Shoemaker, W.R. & J.T. Lennon. Predicting Parallelism and Quantifying Divergence in Microbial Evolution Experiments. mSphere. e00672-21 (2022).
An experimental test of disease resistance function in the skin-associated bacterial symbiont communities of three tropical amphibian species
Hughey, M.C., E.A. Rebollar, R.N. Harris, R. Ibáñez, S.C. Loftus, L.L. House, M.C. Bletz, D. Medina, M.K. Riley, W.R. Shoemaker, M.C. Swartwout, and L.K. Belden. An experimental test of disease resistance function in the skin-associated bacterial symbiont communities of three tropical amphibian species. FEMS Microbiology Ecology 98, fiac023 (2022).
Comparative Population Genetics in the Human Gut Microbiome
Shoemaker, W.R., D. Chen, and N.R. Garud. Comparative Population Genetics in the Human Gut Microbiome. Genome Biology and Evolution 14, evab116 (2022).
Molecular evolutionary dynamics of energy-limited microorganisms
Shoemaker, W.R., E. Polezhaeva, K.B. Givens, & J.T. Lennon. Molecular evolutionary dynamics of energy-limited microorganisms. Molecular Biology and Evolution 38, 4532–45 (2021).
Microbial population dynamics and evolutionary outcomes under extreme energy-limitation
Shoemaker, W.R., S.E. Jones, M.E. Muscarella, M.G. Behringer, B.K. Lehmkuhl, and J.T. Lennon. Microbial population dynamics and evolutionary outcomes under extreme energy-limitation. Proceedings of the National Academy of Sciences of the United States of America 118, 33 (2021).
Evolutionary determinants of genome-wide nucleotide composition
Long, H., W. Sung, S. Kucukyildirim, E. Williams, S. Miller, W. Guo, C. Patterson, C. Gregory, C. Strauss, C. Stone, C. Berne, D. Kysela, W.R. Shoemaker, M. Muscarella, H. Luo, J.T. Lennon, Y.V. Brun, & M. Lynch Evolutionary determinants of genome-wide nucleotide composition. Nature Ecology and Evolution 2, 237-240 (2018).
Evolution with a seed bank: the population genetic consequences of microbial dormancy
Shoemaker, W.R., & J.T. Lennon. Evolution with a seed bank: the population genetic consequences of microbial dormancy. Evolutionary Applications 11, 60–75 (2018).
Whole genome sequence of the soil bacterium Micrococcus
Kuo, V., W.R Shoemaker, M.E. Muscarella, & J.T. Lennon. Whole genome sequence of the soil bacterium Micrococcus* sp. KBS0714. Genome Announcements 5, e00697-17 (2017).
A macroecological theory of microbial biodiversity
Shoemaker, W.R.*, K.J. Locey*, & J.T. Lennon. A macroecological theory of microbial biodiversity. Nature Ecology and Evolution 1, 0107 (2017).
Horizontal and Pseudo-environmental Transmission of the Antifungal Probiotic Bacterium Janthinobacterium lividum on Green Frog (Lithobates clamitans) Tadpoles
Rebollar, E.A., S.J. Simonetti, W.R. Shoemaker, & R.N Harris. Horizontal and Pseudo-environmental Transmission of the Antifungal Probiotic Bacterium Janthinobacterium lividum on Green Frog (Lithobates clamitans) Tadpoles. Applied and Environmental Microbiology 82, 2457-2466 (2016).
Genome Sequence of the Soil Bacterium Janthinobacterium sp. KBS0711
Shoemaker, W.R., M.E. Muscarella, & J.T. Lennon. Genome Sequence of the Soil Bacterium Jantinobacterium sp. KBS0711. Genome Announcements 3, e00689-15 (2015).
* Equal authorship